Harish, A. and G. Caetano-Anollés. 2011. Ribosomal history reveals the origin of modern protein synthesis. PLoS Biology, ms. submitted.
Nava, G., G. Caetano-Anollés and T.S. Stappenbeck. 2011. Bacterial family systematics as the basis for analysis of bacterial ecosystems. Proc. of the National Academy of Sciences USA, ms. submitted.
Kim, K.M., T. Qin, Y.-Y. Jiang, L.-L. Chen, M. Xiong, D. Caetano-Anollés, H.-Y. Zhang and G. Caetano-Anollés. 2011. Tracing the origin and early evolution of aerobic metabolism and the rise of planetary oxygen. Structure, ms. submitted.
Caetano-Anollés, G., K.M. Kim and D. Caetano-Anollés. 2011. The phylogenomic roots of modern biochemistry: Origins of proteins, cofactors and protein biosynthesis. J. Molecular Evolution, ms. submitted.
Nasir, A.M., A. Naeem, M.J. Kahn, H.D. Lopez Nicora and G. Caetano-Anollés. 2011. Annotation of protein domains reveals remarkable conservation in the functional make up of proteomes across superkingdoms. Genes, ms. submitted.
Kim, K.M. and G. Caetano-Anollés. 2011. The evolutionary history of protein fold families and proteomes confirms Archaea is the most ancient superkingdom. Genes, ms. submitted.
Seufferheld, M.J., K.M. Kim, J. Whitfield, A. Valerio and G. Caetano-Anollés. 2011. Evolution of vacuolar proton pyrophosphatase domains and volutin granules: Clues into the early evolutionary origin of the acidocalcisome. Biology Direct, ms. in press.
Wang, M., C.G. Kurland and G. Caetano-Anollés. 2011. Reductive evolution of proteomes and protein structures. Proc. of the National Academy of Sciences USA 108: 11954-11958.
Kim, K.M. and G. Caetano-Anollés. 2011. The proteomic complexity and rise of the primordial ancestor of diversified life. BMC Evolutionary Biology 11:140.
Wang, M., Y.-Y. Jiang, K.M. Kim, G. Qu, H.-F., Ji, J.E. Mittenthal, H.-Y. Zhang and G. Caetano-Anollés. 2011. A universal clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation. Molecular Biology Evolution 28:567-582.
Caetano-Anollés, D., K.M. Kim, and G. Caetano-Anollés. 2011. Proteome evolution and the metabolic origins of translation and cellular life. J. Molecular Evolution 72:14-32.
Twizeyimana, M., P.S. Ojiambo, J.S. Haudenshield, G. Caetano-Anollés, K.F. Pedeley, R. Bandyopadhyay, and G.L. Hartman. 2011. Genetic structure and diversity of Phakopsora pachyrhizi isolates from soyabean. Plant Pathology 60:719-729.
Caetano-Anollés, G. and J.E. Mittenthal. 2010. Exploring the interplay of stability and function in protein evolution. BioEssays 32(8), 655-658. [This paper was featured in the cover]
Kim, K.M. and G. Caetano-Anollés. 2010. Emergence and evolution of modern molecular functions inferred from phylogeomic analysis of ontological data. Molecular Biology and Evolution 27: 1710-1733.
Dupont, C.L. and G. Caetano-Anollés. 2010. Reply to Mulkidjanian and Galperin: Zn may have constrained evolution during the Proterozoic but not the Archean. Proc. of the National Academy of Sciences USA 107: E138.
Dupont, C.L., A. Butcher, R.E. Valas, P.E. Bourne, and G. Caetano-Anollés. 2010. History of biological metal utilization inferred through phylogenomic analysis of protein structure. Proc. of the National Academy of Sciences USA 107: 10567-10572.
Qi, M., F.-J Sun, G. Caetano-Anollés, and Y. Zhao. 2010. Comparative genomic and phylogenetic analysis of two-component signal transduction systems in Erwinia amylovora and related enterobacteria. J. Molecular Evolution 70: 167-180.
Sun, F.-J. and G. Caetano-Anollés. 2010. The origin of modern 5S rRNA: A case of relating models of structural history to phylogenetic data. J. Molecular Evolution 71:3-5.
Sun, F.-J. and G. Caetano-Anollés. 2010. The ancient history if the structure of ribonuclease P and the early origins of Archaea. BMC Bioinformatics 11: 153.
Caetano-Anollés, G. (2010) Evolutionary Genomics and Systems Biology. John Wiley & Sons, Inc., Hoboken, NJ. In press.
Caetano-Anolles, G., L.S. Yafremava, and J.M. Mittenthal. 2010. Modularity and dissipation in the evolution of molecular function, structures and networks. In G. Caetano-Anollés (ed.), Evolutionary bioinformatics and systems biology. John Wiley & Sons, Inc., Hoboken, NJ. PP. 431-450.
Sun, F.-J., A. Harish and G. Caetano-Anolles. 2010. Phylogenetic utility of RNA structure: evolution’s arrow and emergence of modern biochemistry and diversified life. In G. Caetano-Anollés (ed.), Evolutionary bioinformatics and systems biology. John Wiley & Sons, Inc., Hoboken, NJ. PP. 329-360.
Caetano-Anollés, G., L.S. Yafremava, H. Gee, D. Caetano-Anollés, H.S. Kim, and J.E. Mittenthal. 2009. The origin and evolution of modern metabolism. International Journal Biochemistry & Cell Biology 41: 285-297.
Wang, M. and G. Caetano-Anollés. 2009. The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world. Structure 17: 66-78. [The paper was featured in the cover of this Cell Press journal]
Caetano-Anollés, G., M. Wang, D. Caetano-Anollés and J.E. Mittenthal. 2009. The origin, evolution and structure of the protein world. Biochemical Journal 417: 621-637.
Sun, F.-J. and G. Caetano-Anollés. 2009. The evolutionary significance of the long variable arm in transfer RNA. Complexity 14: 26-39. [The paper was featured in the cover]
Sun, F.-J. and G. Caetano-Anollés. 2009. The evolutionary history of the structure of 5S rRNA. J. Molecular Evolution 69: 430-443. [The paper was featured in the cover]
Caetano-Anollés, G. and M. Wang. 2008. Evolution of the protein world. The Biochemist 30: 4-8. [special issue in celebration of the 50th anniversary of the first protein structure]
Caetano-Anollés, G., F.-J. Sun, M. Wang, L.S. Yafremava, A. Harish, H.S. Kim, V. Knudsen, D. Caetano-Anollés, and J.E. Mittenthal. 2008. Origins and evolution of modern biochemistry: insights from genomes and molecular structure. Frontiers Bioscience 13: 5212-5240.
Kim, K.M., S. Sung, G. Caetano-Anollés, J.Y. Han, and H. Kim. 2008. An approach of orthology detection from homologous sequences under minimum evolution. Nucleic Acids Research 36 (17): e110.
Knudsen, V. and G. Caetano-Anollés. 2008. NOBAI: a web server for character coding of geometrical and statistical features in RNA structure. Nucleic Acids Research 36: W85-W90.
Sun, F.-J. and G. Caetano-Anollés. 2008. Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code. PLoS ONE 3(7): e2799
Sun, F.-J. and G. Caetano-Anollés. 2008. Transfer RNA and the origins of diversified life. Science Progress 91 (3): 265-284.
Sun, F.-J. and G. Caetano-Anollés. 2008. The origin and evolution of tRNA inferred from phylogenetic analysis of structure. J. Molecular Evolution 61: 21-35.
Sun, F.-J. and G. Caetano-Anollés. 2008. Evolutionary patterns in the sequence and structure of transfer RNA: early origins of Archaea and viruses. PLoS Computational Biology 4(3): e100000018
Caetano-Anollés, G. 2008. Launch Editorial. Genomics Insights 1: 1-2.
Caetano-Anolles, G. 2008. Evolutionary genomics: linking macromolecular structure, genomes and biological networks. In P. Dion and C.S. Nautiyal (eds), Molecular Mechanisms of Plant and Microbe Coexistence, Spring Verlag, Heidelberg, Germany, pp.155-181.
Caetano-Anollés, G., H. S. Kim and J.E. Mittenthal. 2007. The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture. Proc. of the National Academy of Sciences USA 104: 9358-9363.
Wang, M., L.S. Yafremava, D. Caetano-Anollés, J.E. Mittenthal and G. Caetano-Anollés. 2007. Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world. Genome Research 17: 1572-1585. [The paper was featured in the cover of the journal]
Sun, F., S. Fleurdepine, C. Bousquet-Antonelli, G. Caetano-Anollés and J-M Deragon. 2007. Common evolutionary trends for tRNA-derived SINE RNA structures. Trends Genetics 23: 26-33.
Martin, N., E.A. Ruedi, R. LeDuc, F. Sun and G. Caetano-Anollés. 2007. Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: Are they proof of an ancient genome duplication event? Biology Direct 2: 23.
Trigiano, R.N., M.H. Ament, S.L. Finley, R.E. DeVries, N.R. Rowland and G. Caetano-Anollés. 2007. Molecular techniques used for studying systematics and evolution of plant pathogens. In R.N. Trigiano, M.T Windham and A.S. Windham (eds.), Plant Pathology: Concepts and Laboratory Exercises (second edition). pp.2 79-307. CRC Press. Boca Raton, FL.
Kim, H. S., G. Caetano-Anollés, and J.E. Mittenthal. 2006. MANET: Tracing evolution of protein architecture in metabolic networks. BMC Bioinformatics 7: 351
Wang, M., S.M. Boca, R. Kalelkar, J.E. Mittenthal, and G. Caetano-Anollés. 2006. A phylogenomic reconstruction of the protein world based on a genomic census of protein fold architecture. Complexity 12:27-40.
Wang, M. and G. Caetano-Anollés. 2006. Global phylogeny determined by the combination of protein domains in proteomes. Molecular Biology Evolution 23: 2444-2453.
Caetano-Anollés, G. and D. Caetano-Anollés. 2005. Universal sharing patterns in proteomes and evolution of protein fold architecture and life. J. Molecular Evolution 60: 484- 498.
Caetano-Anollés, G. 2005. Grass evolution inferred from chromosomal rearrangements and geometrical and statistical features in RNA structure. J. Molecular Evolution 60:635-652.
Caetano-Anolles, G. 2005. Evolution of genome size in the grasses. Crop Science 45: 1809-1816.
Caetano-Anollés, G. 2005. Teaching Bioinformatics: needs and challenges. In R. Chakravarthy (ed.), Agri-Informatics: An Introduction, pp. 15-22. ICFAI Univ. Press. Hiderabad, India.
Ricker, K. (on research by G. Caetano-Anollés). 2005. Learning from the tree of life. NCSA Access 18: 14-17.
Caetano-Anollés, G. 2004. Protein evolution: charting the universe of macromolecular structure. Chemistry Today 22: 20-22 (pdf)
Caetano-Anollés, G. 2004. Defining a universe of macromolecular architecture. Biotech Center News, UIUC, Winter issue, 1-6.
Caetano-Anollés, G. and Caetano-Anollés, D. 2003. An evolutionarily structured universe of protein architecture. Genome Reseach 13: 1563-1571 (abstract)(pdf).
Abesha, E., G. Caetano-Anollés and K. Høiland. 2003. Population genetics and spatial structure of the fairy ring fungus Marasmius oreades in a Norwegian sand dune ecosystem. Mycologia 95: 1021-1031 (pdf)
Mathesius, U., S. Mulders, M. Gao, M. Teplitski, G. Caetano-Anollés, B. G. Rolfe, and W.D. Bauer. 2003. Extensive and specific responses of a eukaryote to bacterial quorum sensing signals. Proceedings of the National Academy of Science USA 100:1444-1449 (pdf) (supplementary material).
Abesha, E. and G. Caetano-Anollés. 2003. Studying the ecology, systematics and evolution of plant pathogens. In R.N. Trigiano, M.S. Windham and M.T. Windham (eds.), Plant Pathology: Concepts and Laboratory Exercises. pp.209-216. CRC Press. Boca Raton, FL.
Trigiano, R.N., M.H. Ament, L.F. Habera and G. Caetano-Anollés. 2003. Molecular techniques used for studying systematics and evolution of plant pathogens. Ibid. pp. 217-232.
Caetano-Anollés, G. 2003. Method for tracking the evolution of a finite dynamic system. TF03057 Invention disclosure submitted (6-11-2003) to Office of Technology Management, UIUC.
Caetano-Caetano-Anollés, G. 2002. Evolved RNA secondary structure and the rooting of the universal tree. Journal of Molecular Evolution 54: 333-345 (abstract)(pdf).
Caetano-Anollés, G. 2001. Novel strategies to study the role of mutation and nucleic acid structure in evolution. Plant Cell, Tissue and Organ Culture 67: 115-132 (abstract)(pdf).
Caetano-Anollés, G. and R.N. Trigiano. 2001. Patterns of evolution in Discula fungi and the origin of dogwood anthracnose in North America studied using arbitrarily amplified and ribosomal DNA. Current Genetics 39: 346-354 (pdf).
Caetano-Anollés, G. 2001. Life’s prerogative: An evolutionary perspective on human population growth, agriculture and earth systems. Agro-Food-Industry Hi-Tech 12: 32-35 (pdf).
Caetano-Anollés, G. 2001. Plant genotyping using arbitrarily amplified DNA. In R. Henry (ed.), DNA fingerprinting of plants. pp. 29-46. CAB International, Oxford, UK.
Caetano-Anollés, G. 2001. Arbitrarily amplified DNA: new molecular approaches to plant breeding, ecology and evolution. In Radioactively labeled DNA probes for crop improvement, pp. 35-50. IAEA-Tecdoc-1253. International Atomic Energy Agency. Vienna, Austria.
Caetano-Anollés, G. 2000. Evolution of RNA secondary structure and genome size in the grasses. Plant Molecular Biology Reporter 18 (2, supplement): S21-3.
Caetano-Anollés, G. and P. M. Gresshoff. 2000. Fingerprinting of nucleic acids, products and methods. US patent 6,074,818.
Caetano-Anollés, G., S.E. Schlarbaum and R.N. Trigiano. 1999. Taguchi-optimized DNA amplification fingerprintin and marker screening for pseudo-testcross mapping of flowering dogwood (Cornus florida L.) (pdf). Euphytica 106: 209-222.
Caetano-Anollés, G. 1999. High genome-wide mutation rates in vegetatively propagated bermudagrasses. Molecular Ecology 8: 1211-1221.
Caetano-Anollés, G. 1999. DAF optimization using Taguchi methods and the effect of thermal cycling parameters on DNA amplification (paper and update). In M. McClelland and A.B. Pardee (eds), Expression Genetics: Accelerated and High-Throughput Methods. pp. 113-126. Eaton Publishing, Natick, MA.
Caetano-Anollés, G. 1999. Oligonucleotide constructs and methods for the generation of sequence signatures from nucleic acids. US patent 5,962,221.
Caetano-Anollés, G. 1998. Optimization of DNA amplification fingerprinting using modified Taguchi methods and the effect of thermal cycling. Biotechniques 25: 472-480 (pdf).
Caetano-Anollés, G. 1998. Técnicas geneticas para el rastreo de acidos nucleicos. Investigacion y Ciencia (spanish edition of Scientific American) 263: 33-34 (abstract).
Trigiano, R., M. C. Scott and G. Caetano-Anollés 1998. Genetic signatures from amplification profiles characterize DNA mutation in somatic and radiation-induced sports of chrysanthemum. Journal of the American Society for Horticultural Science 123: 642-646.
Trigiano, R.N. and G. Caetano-Anollés 1998. DNA amplification fingerprinting of horticultural species: four laboratory exercises. HortTechnology 8: 413-423.
Caetano-Anollés, G. 1998. DNA analysis of genetic diversity in turfgrass. Crop Science 38: 1415-1424 (pdf).
Caetano-Anollés, G. 1998. Genetic instability of bermudagrass cultivars Tifgreen and Tifdwarf detected by DAF and ASAP analysis of accessions and off-types. Euphytica 101: 165-173 (pdf).
Caetano-Anollés, G. 1998. Arbitrary oligonucleotides: primers for amplification and direct identification of nucleic acids, genes and organisms. In B. Schierwater and R. DeSalle (eds.), Molecular Ecology and Evolution: Approaches and Applications, 2nd. edition. pp. 107-123. Birkhauser Verlag, Basel, Switzerland.
Caetano-Anollés, G. and R.N. Trigiano. 1997. DNA markers in agricultural biotechnology. AgBiotech News and Information 9:235-242.
Caetano-Anollés, G. , L.M. Callahan and P.M. Gresshoff. 1997. The origin of bermudagrass (Cynodon) off-types inferred by DNA amplification fingerprinting. Crop Science 37: 81-87.
Caetano-Anollés, G. 1997. Molecular dissection and improvement of nodulation in legumes. Field Crops Research 53: 47-68 (abstract) (pdf).
Caetano-Anollés, G. and P.M. Gresshoff. 1997. DNA markers: Protocols, Applications and Overviews. John Wiley & Sons, Inc., New York. pp. 364.
Caetano-Anollés, G. 1997. DNA amplification fingerprinting. In R. M. Micheli and R. Bova (eds.), Fingerprinting methods based on PCR. pp. 65-80. Springer-Verlag, Heidelberg, Germany.
Caetano-Anollés, G. 1997. Fingerprint tailoring. Ibid. pp. 103-117.
Caetano-Anollés, G. 1997. Resolving DNA amplification products using polyacrylamide gel electrophoresis and silver staining. Ibid. pp. 119-134.
Caetano-Anollés, G. 1997. Recovering amplified DNA from silver stained gels. Ibid. pp. 153-160.
Gresshoff, P.M. and G. Caetano-Anollés. 1997. Commercial applications of DNA profiling by amplification with arbitrary oligonucleotide primers. In P.M. Gresshoff (ed.), Technology Transfer of Plant Biotechnology, pp. 131-148. CRC Press, Boca Raton, FL.
Gresshoff, P.M., L.M. Callahan, F. Ghassemi and G. Caetano-Anollés. 1997. Molecular genetic analysis of turfgrass. In M.B. Sticklen and M. Kenna (eds.), Turfgrass Biotechnology. pp. 3-18. Ann Arbor Press, Chelsea, MI.
Caetano-Anollés, G. 1997. Nucleic acid scanning by amplification with mini-hairpin and microsatellite oligonucleotide primers. In G. Caetano-Anollés and P.M. Gresshoff (eds.), DNA markers: Protocols, Applications and Overviews. pp. 91-112. John Wiley & Sons, New York, NY.
Caetano-Anollés, G. 1996. Scanning of nucleic acids by in vitro amplification: new developments and applications. Nature Biotechnology 14: 1668-1674.
Caetano-Anollés, G. 1996. Fingerprinting nucleic acids with arbitrary oligonucleotide primers. Agro-Food-Industry Hi-Tech 7: 26-35.
Caetano-Anollés, G. and P.M. Gresshoff. 1996. Generation of sequence signatures from DNA amplification fingerprints with mini-hairpin and microsatellite primers. Biotechniques 20: 1044-1056 (pdf).
Caetano-Anollés, G., B.J. Bassam, G. McCracken, B. Reddick and P.M. Gresshoff. 1996. Fast semi-automated detection of DAF-generated polymorphic DNA. Pharmacia Application Notes 18-1115-51.
Salazar, N. and G. Caetano-Anollés. 1996. Nucleic acid scanning-by-hybridization of enterohemorrhagic Escherichia coli isolates using oligodeoxynucleotide arrays. Nucleic Acids Research 24: 5056-5057 (pdf).
Caetano-Anollés, G., R.N. Trigiano and M.T. Windham. 1996. Sequence signatures from DNA amplification fingerprints reveal fine population structure of the dogwood-pathogen Discula destructiva. FEMS Microbiology Letters 145: 377-383 (pdf).
Scott, M.C., G. Caetano-Anollés and R.N. Trigiano. 1996. DNA amplification fingerprinting identifies closely related cultivars of chrysanthemum. Journal of the American Society for Horticultural Science 121: 1043-1048.
Cerny, T.A., G. Caetano-Anollés, R.N. Trigiano and T.W. Starman. 1996. Molecular phylogeny and DNA amplification fingerprinting of Petunia taxa. Theoretical and Applied Genetics 92: 1009-1016.
Caetano-Anollés, G. and P.M. Gresshoff. 1996. Advances in the positional cloning of nodulation genes in soybean. Plant and Soil 186:1-7.
Caetano-Anollés, G., and R.N. Trigiano. 1996. Recovery of DNA amplification products from silver stained polyacrylamide gels. In B.A. White (ed.), Methods in Molecular Biology, Vol. 67: PCR Cloning Protocols: From Molecular Cloning to Genetic Engineering. pp. 111-127. Humana Press, Totowa, NJ.
Gresshoff, P.M., G. Caetano-Anollés, R.P. Funke, F. Ghassemi, J. Padilla, G. Crüger, S. Pillai, J. Stiller, R. Chian, A. Filatov, R. McDonnell, S. Tupale, Q. Jian, L. Calfee-Richardson, and D. Landau-Ellis. 1996. Gene discovery in early plant nodulation responses and systemic regulation of nodulation. In G. Stacey, B. Mullins and P.M. Gresshoff (eds.), The Biology of Plant Microbe Interactions, pp. 369-376. APS Publisher, Minneapolis, MN.
Caetano-Anollés, G., J.E. Padilla, F. Ghassemi, S. Abbitt, A. Kolchinsky, and P.M. Gresshoff. 1996. Positional cloning of nodulation genes in soybean: coupling DNA amplification and bulked segregant analysis. In I.A. Tikhonovich, V.I. Romanov, N.A. Povorov and W.E. Newton (eds.), Nitrogen Fixation: Fundamentals and Applications, p. 479. Kluwer Academic Pub., Dordrecht.
Padilla, J.E., G. Caetano-Anollés, D. Landau-Ellis, and P.M. Gresshoff. 1996. Analysis of sequence characterized amplified regions (SCAR) derived from AFLP markers linked to the supernodulation locus of soybean. In I.A. Tikhonovich, V.I. Romanov, N.A. Povorov and W.E. Newton (eds.), Nitrogen Fixation: Fundamentals and Applications, p. 481. Kluwer Academic Pub, Dordrecht.
Caetano-Anollés, G., R. N. Trigiano, and M. T. Windham. 1996. Fine population structure of Discula destructiva. HortScience 31: 586 (Abstract 121).
Caetano-Anollés, G., Trigiano, R. N. and M. T. Windham. 1996. Fine population structure of Discula destructiva. Proceedings of the Southern Nurserymen’s Association Research Conference 41: 174-177.
Caetano-Anollés, G., B. J. Bassam and P. M. Gresshoff. 1996. Silver staining of DNA. US patent 5,492,810. PTO patent. Technology licensed to Promega Corporation.
Caetano-Anollés, G., B. J. Bassam and P. M. Gresshoff. 1996. Method and kit for silver staining, developing an image and visualizing biological materials. US patent 5,567,585. Technology licensed to Promega Corporation.
Trigiano, R.N., G. Caetano-Anollés and M.A. Windham. 1995. Towards understanding the biology of the fungi that cause dogwood anthracnose. Tennessee AgriScience 175: 11-16.
Trigiano, R.N., G. Caetano-Anollés, B.J. Bassam, and M.T. Windham. 1995. DNA amplification fingerprinting provides evidence that Discula destructiva, the cause of dogwood anthracnose in North America, is an introduced pathogen. Mycologia 87:490-500.
Caetano-Anollés, G., L.M. Callahan, P.E. Williams, K.R. Weaver, and P.M. Gresshoff. 1995. DNA amplification fingerprinting analysis of bermudagrass (Cynodon): genetic relationships between species and interspecific crosses. Theoretical and Applied Genetics 91:228-235.
Weaver, K.R., L.M. Callahan, G. Caetano-Anollés, and P.M. Gresshoff. 1995. DNA amplification fingerprinting and hybridization analysis of centipedegrass. Crop Science 35:881-885.
Gresshoff, P.M., R.P. Funke, G. Caetano-Anollés, R. Prabhu, S. Pillai, A. Kolchinsky, and D. Landau-Ellis. 1995. Application of high molecular weight DNA cloning in legume nodulation gene analysis. In Induced Mutations and Molecular Techniques for Crop Improvement, pp. 275-285. IAEA Publications, Vienna, Austria.
Gresshoff, P.M., A. Kolchinsky, J. Deckert, D. Landau-Ellis, R. Funke, N. Taranenko, R. Prabhu. and G. Caetano-Anollés. 1995. Plant genome analysis: general benefits from a study of soybean nodulation genes. In K. A. Malik, A. Nasim and A. M. Khalid (eds.), Biotechnology for Sustainable Development. pp. 59-80. National Institute for Biotechnology & Genetic Engineering, Faisalabad, Pakistan.
Scott, M.C., G. Caetano-Anollés and R.N. Trigiano. 1995. DNA amplification fingerprinting (DAF) identifies closely related cultivars in six series of chrysanthemum. HortScience 30:777.
Trigiano, R. N., G. Caetano-Anollés, and M. T. Windham. 1995. Discula destructiva, an introduced pathogen of North American dogwoods. Proceedings of the Southern Nurserymen’s Association Research Conference, 40:233-234.
Caetano-Anollés, G., B.J. Bassam and P. M. Gresshoff. 1995. Fingerprinting of nucleic acids, products and methods. Patent Cooperation Treaty (PCT) International Publication WO 95/33853
Bassam, B. J., G. Caetano-Anollés and P. M. Gresshoff. 1995. Method for profiling nucleic acids of unknown sequence using arbitrary oligonucleotide primers. US patent 5,413,909. Canadian patent 2,174,748.
Caetano-Anollés, G. 1994. MAAP: a versatile and universal tool for genome analysis. Plant Molecular Biology 25:1011-1026.
Caetano-Anollés, G. and P.M. Gresshoff. 1994. DNA amplification fingerprinting of plant genomes. Methods in Molecular and Cellular Biology 5:62-70.
Caetano-Anollés, G., B.J. Bassam, and P.M. Gresshoff. 1994. Buffer components tailor DNA amplification with arbitrary primers. PCR Methods and Applications 4:59-61.
Caetano-Anollés, G. and P.M. Gresshoff. 1994. DNA amplification fingerprinting using mini-hairpin oligonucleotide primers. Bio/technology 12:619-623.
Caetano-Anollés, G. and P.M. Gresshoff. 1994. Staining nucleic acids with silver: an alternative to radioisotopic and fluorescent labeling. Promega Notes 45:13-18.
Weaver, K.R., G. Caetano-Anollés, P.M. Gresshoff and L.M. Callahan. 1994. Isolation and cloning of DNA amplification products from silver stained polyacrylamide gels. Biotechniques 16:226-227.
Blauenfeldt, J., P.A. Joshi, P.M. Gresshoff and G. Caetano-Anollés. 1994. Nodulation of white clover (Trifolium repens) in the absence of Rhizobium. Protoplasma 179:106-110.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1994. Multiple arbitrary amplicon profiling using short oligonucleotide primers. In P.M. Gresshoff (ed.), Plant Genome Analysis. pp. 29-45. CRC Press, Boca Raton, FL.
Caetano-Anollés, G. and P.M. Gresshoff. 1994. DNA amplification fingerprinting: a general tool with applications in breeding, identification and phylogenetic analysis of plants. In B. Schierwater, B. Streit, G.P. Wagner, and R. DeSalle (eds.), Molecular Ecology and Evolution: Approaches and Applications, pp. 17-31, Birkhauser Verlag, Basel, Switzerland.
Padilla, J.E., G. Caetano-Anollés and P. M. Gresshoff. 1994. Isolation and cloning of AFLPs generated by tec-MAAP and tightly linked to the nts locus in soybean. Soybean Genetics Newsletter 21:285-288.
Caetano-Anollés, G. and P. M. Gresshoff. 1994. Arbitrary mini-hairpin oligonucleotide primers: a tool for analysis of genomes, cloned DNA and PCR amplified fragments. Soybean Genetics Newsletter 21:280-284.
Caetano-Anollés, G. 1993. Amplifying DNA with arbitrary oligonucleotide primers. PCR Methods and Applications 3:85-94.
Bassam, B.J. and G. Caetano-Anollés. 1993. Silver staining of DNA in polyacrylamide gels. Applied Biochemistry and Biotechnology 42:181-188.
Caetano-Anollés, G. and B.J. Bassam. 1993. DNA amplification fingerprinting using arbitrary oligonucleotide primers. Applied Biochemistry and Biotechnology 42:189-200.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1993. Enhanced detection of polymorphic DNA by multiple arbitrary amplicon profiling: finding markers tightly linked to the supernodulation locus in soybean. Molecular and General Genetics 241:57-64.
Bassam, B.J. and G. Caetano-Anollés. 1993. Automated "Hot Start" PCR using mineral oil and parrafin wax. Biotechniques 14:30-34.
Callahan, L.M., G. Caetano-Anollés, B.J. Bassam, K. Weaver, A. MacKenzie and P.M. Gresshoff. 1993. DNA fingerprinting of turfgrass. Golf Course Management 9 (6):80-86.
Callahan, L.M., K. Weaver, G. Caetano-Anollés, B.J. Bassam and P.M. Gresshoff. 1993. DNA fingerprinting of turfgrasses. International Turfgrass Society Research Journal 7: 761-767.
Joshi, P.A., G. Caetano-Anollés, E.T. Graham, and P.M. Gresshoff. 1993. Ultrastructure of transfer cells in spontaneous nodules of alfalfa (Medicago sativa). Protoplasma 172:64-76.
Eskew, D.L., Q. Jian, G. Caetano-Anollés, and P.M. Gresshoff. 1993. Kinetics of nodule development in Glycine soja. Plant Physiology 103:1139-1145 (pdf).
Caetano-Anollés, G. and P.M. Gresshoff. 1993. Nodule distribution of soybean and a supernodulating mutant in sand-vermiculite. Plant and Soil 140:265-270.
Caetano-Anollés, G., P.A. Joshi and P.M. Gresshoff. 1993. Nodule morphogenesis in the absence of Rhizobium. In R. Palacios, J. Mora and W.E. Newton (eds.), New Horizons in Nitrogen Fixation. pp. 297-302. Kluwer Academic Pub., Dordrecht, Netherlands.
Gresshoff, P. M., G. R. Funke, D. Landau-Ellis, G. Caetano-Anollés, A. Kolchinsky, and J. Deckert. 1993. Genome analysis of a soybean nodulation region. In R. Palacios, J. Mora and W.E. Newton (eds.), New Horizons in Nitrogen Fixation. p. 341. Kluwer Academic Pub., Dordrecht.
Caetano-Anollés, G., B.J. Bassam, R. Prabhu, B.K. Tamot and P.M. Gresshoff. 1993. Fingerprinting genomes with arbitrary primers: finding MAAP markers linked to the soybean nts locus. In R. Palacios, J. Mora and W.E. Newton (eds.), New Horizons in Nitrogen Fixation. p. 331. Kluwer Academic Pub., Dordrecht.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1993. Enhanced detection of polymorphic DNA: identification of markers tightly linked to the supernodulation locus in soybean by multiple arbitrary amplicon profiling of endonuclease digested DNA. Soybean Genetics Newsletter 20:173-179.
Gresshoff, P. M., E. Almeida, B. J. Bassam, J. Blauenfeldt, J. Bond, G. Caetano-Anollés, R. Chian, J. Deckert, R. Funke, F. Ghassemi, Q. Jiang, P. A. Joshi, A. Kolchinski, N. Kruchinina, D. Landau-Ellis, R. McDonnell, R. Prabhu, B. Tamot, N. Taranenko and Z. Zhang. 1993. Genome analysis of soybean (Glycine max L. Merr.). DNA Link 3: 23-34.
Trigiano, R.N., B.J. Bassam, G. Caetano-Anollés, L.M. Bell, K.R. Weaver and M.T. Windham. 1993. Physiological and molecular aspects of dogwood anthracnose fungi. Proceedings of the 7th Regional Dogwood Workshop. pp.34-38. Chatanooga, TN.
Trigiano, R.N., B.J. Bassam, G. Caetano-Anollés and M.T. Windham. 1993. Characterization of isolates of Discula destructiva and Discula species using DNA amplification fingerprinting. Phytopathology 83: 1338 (Abstr.).
Caetano-Anollés, G., B.J. Bassam, and P.M. Gresshoff. 1992. Fingerprinting genomes with arbitrary oligonucleotide primers. Molecular Genetics: Life Science Advances 11:1-6.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1992. Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides. Molecular and General Genetics 235:157-165.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1992. DNA fingerprinting: MAAPing out a RAPD redefinition. Bio/technology 10:937.
Eskew, D.L., G. Caetano-Anollés, B.J. Bassam and P.M. Gresshoff. 1992. DNA amplification fingerprinting of the Azolla-Anabaena symbiosis. Plant Molecular Biology 19:624-634.
Bassam, B.J., G. Caetano-Anollés and P.M. Gresshoff. 1992. DNA amplification fingerprinting of bacteria. Applied Microbiology and Biotechnology 38:70-76.
Jayarao, B., B.J. Bassam, G. Caetano-Anollés, P.M. Gresshoff and S. Oliver. 1992. DNA amplification fingerprinting of Streptococcus uberis. Journal of Clinical Microbiology 30:1347-1350.
Gerahty, N., G. Caetano-Anollés, P.A. Joshi and P.M. Gresshoff. 1992. Anatomical analysis of nodule development in soybean reveals an additional autoregulatory control point. Plant Science 85:1-7.
Caetano-Anollés, G., and P.M. Gresshoff. 1992. Plant genetic suppression of the non-nodulation phenotype of Rhizobium meliloti host-range nodH mutants: gene-for-gene interaction in the alfalfa-Rhizobium symbiosis? Theoretical and Applied Genetics 84:624-632.
Caetano-Anollés, G., E. Wrobel-Boerner, and W.D. Bauer. 1992. Growth and movement of spot inoculated Rhizobium meliloti on the root surface of alfalfa. Plant Physiology 98:1181-118.9
Lagares, A., G. Caetano-Anollés, K. Niehaus, J. Lorenzen, H.D. Ljunggren, A. Pühler and G. Favelukes. 1992. A Rhizobium meliloti lipopolysaccharide mutant altered in competitiveness for nodulation of alfalfa. Journal of Bacteriology 174:5941-5952
Bassam, B.J., G. Caetano-Anollés and P.M. Gresshoff. 1992. DNA amplification fingerprinting and its potential application for genome analysis. In P. M. Gresshoff (ed.), Current Topics in Plant Molecular Biology. Plant Biotechnology and Development. pp. 1-9. CRC Press, Boca Raton, FL.
Gresshoff, P.M. and G. Caetano-Anollés. 1992. Systemic control of nodulation in soybean. Ibid. pp. 52-61.
Caetano-Anollés, G., P.A. Joshi and P.M. Gresshoff. 1992. Nodulation in the absence of Rhizobium. Ibid. pp. 67-76.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1992. DNA amplification fingerprinting with very short primers. Applications of RAPD Technology to Plant Breeding. Joint Plant Breeding Symposia Series. pp.18-25. Crop Science Society of America – American Society of Horticultural Science – American Genetics Association, Minneapolis, MN.
Jayarao, B.M., B.J. Bassam, G. Caetano-Anollés, P.M. Gresshoff, and S.P. Oliver. 1992. DNA amplification fingerprinting: a new technique for subtyping Streptococcus uberis. Journal of Dairy Science 75: 309.
Trigiano, R.N., G. Caetano-Anollés, B.J. Bassam, K.R. Weaver, M.T. Windham and P.M. Gresshoff. 1992. DNA amplification fingerprinting of dogwood anthacnose fungi. Proceedings of the Southern Nurserymen’s Association Research Conference, 37:196-199.
Caetano-Anollés, G., B. J. Bassam and P. M. Gresshoff. 1992. DNA silver staining. Patent Cooperation Treaty (PCT) International Publication WO92/17611. Technology licensed to Promega Corporation.
Bassam, B. J., G. Caetano-Anollés and P. M. Gresshoff. 1992. DNA amplification fingerprinting. Patent Cooperation Treaty (PCT) International Publication WO92/03567.
Caetano-Anollés, G. , B. J. Bassam, and P.M. Gresshoff. 1991. DNA amplification fingerprinting: a strategy for genome analysis. Plant Molecular Biology Reporter 9:292-305.
Bassam, B.J., G. Caetano-Anollés and P.M. Gresshoff. 1991 Rapid and sensitive silver staining of nucleic acids in polyacrylamide gels. Analytical Biochemistry 196:80-83.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1991. DNA amplification fingerprinting using very short arbitrary oligonucleotides. Bio/technology 9:553-557.
Caetano-Anollés, G. and P.M. Gresshoff. 1991. Nodulation in the absence of Rhizobium: organ morphogenesis without external signaling. Plant Physiology: Life Science Advances 10:195-200.
Joshi, P.A., G. Caetano-Anollés, G., E.T. Graham and P.M. Gresshoff. 1991. Ontogeny and ultrastructure of spontaneous nodules in alfalfa (Medicago sativa). Protoplasma 162:1-11.
Caetano-Anollés, G, P.A. Joshi and P.M. Gresshoff. 1991. Spontaneous nodules induce feedback suppression of nodulation in alfalfa. Planta 183:77-82.
Caetano-Anollés, G. and P.M. Gresshoff. 1991. Plant genetic control of nodulation. Annual Review in Microbiology 45:345-382.
Caetano-Anollés, G., E.T. Paparozzi and P.M. Gresshoff. 1991. Mature nodules and root tips control nodulation in soybean. Journal of Plant Physiology 137: 389-396.
Caetano-Anollés, G. and P.M. Gresshoff. 1991. Alfalfa controls nodulation during the onset of Rhizobium-induced cortical cell division. Plant Physiology 95:366-373.
Caetano-Anollés, G. and P.M. Gresshoff. 1991. Efficiency of nodule initiation and autoregulatory responses in a supernodulating soybean mutant. Applied and Environmental Microbiology 57:2205-2210.
Caetano-Anollés, G. and P.M. Gresshoff. 1991. Excision of nodules induced by Rhizobium meliloti exopolysaccharide mutants releases autoregulation in alfalfa. Journal of Plant Physiology 138:765-767.
Gresshoff, P.M., D. Landau-Ellis, R. Funke, L. Sayavedra-Soto and G. Caetano-Anollés. 1991. Plant genetic control of nodulation in legumes. In H. Hennecke and D. P. S. Verma (eds.), Advances in Molecular Genetics of Plant-Microbe Interactions. pp. 331-335. Kluwer Academic Publishers, Dordrecht, Netherlands.
Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1991. High-resolution DNA amplification fingerprinting (DAF): detection of amplification fragment length polymorphisms in soybean using very short arbitrary oligonucleotide primers. Soybean Genetics Newsletter 18:279-283.
Gresshoff, P.M., L. Sayavedra-Soto, D. Landau-Ellis, J. Culpepper, S. Angermüller, G. Caetano-Anollés, and B. Bassam. 1990. DNA fingerprinting – The powerful new tool for the genetic detective. Tennessee Farm and Home Science 155:4-10.
Caetano-Anollés, G. and P.M. Gresshoff. 1990. Early induction of feedback regulatory responses governing nodulation in soybean. Plant Science 71:69-81.
Caetano-Anollés, G., A. Lagares, and W.D. Bauer. 1990. Rhizobium meliloti exopolysaccharide mutants elicit feedback regulation of nodule formation in alfalfa. Plant Physiology 91:368-374.
Caetano-Anollés, G. and W.D. Bauer. 1990. Host-specificity mutants of Rhizobium meliloti have additive effects in situ on initiation of alfalfa nodules. Planta 181:109-116.
Caetano-Anollés, G., G. Favelukes, and W.D. Bauer. 1990. Optimization of legume seed sterilization. Crop Science 30:708-712.
Bauer, W. D. and G. Caetano-Anollés. 1990. Chemotaxis, induced gene expression and competitiveness in the rhizosphere. Plant and Soil 129:45-52.
Joshi, P.A., G. Caetano-Anollés, E.T. Graham and P.M. Gresshoff. 1990 Ultrastructural development of spontaneous nodules in alfalfa. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives. p. 744. Chapman and Hall, New York.
Gerahty, N., G. Caetano-Anollés, P.A. Joshi, and P.M. Gresshoff. 1990 Distribution of Bradyrhizobium-induced cell divisions in soybean. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives. p. 737. Chapman and Hall, New York.
Caetano-Anollés, G., P.A. Joshi and P.M. Gresshoff. 1990 Spontaneous nodules induce autoregulation of nodule formation in alfalfa. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives. p.728. Chapman and Hall, New York.
Caetano-Anollés, G. and P.M. Gresshoff. 1990. Alternative mechanisms control nodulation in legumes. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives.p. 727. Chapman and Hall, New York.
Caetano-Anollés, G., A. Lagares, and G. Favelukes. 1989. Adsorption of Rhizobium meliloti to alfalfa roots: Dependence on divalent cations and pH. Plant and Soil 117:67-74.
Caetano-Anollés, G. and P.M. Gresshoff. 1989. Early symbiotic events leading to nodulation control in legumes. Tennessee Farm and Home Science 152:4-12.
Gresshoff, P.M., J.E. Olsson, Z.Z. Li, and G. Caetano-Anollés. 1989. Root-shoot interaction in the control of nodulation in soybean. In D.D. Randall and D.G. Blevins (eds.), Current Topics in Plant Biochemistry and Physiology, Vol. 8. pp. 125-139. Univ. of Missouri, Columbia, MO.
Gresshoff, P.M., B.J. Bassam, L. Sayavedra-Soto, A.J. Krotzky, R. McDonnell, S. Angermuller, D. Landau-Ellis, L.J. Schuller, J. Bond, T. Sutherland, P. Joshi, N. Gerahty, G. Caetano-Anollés, and Z.Z. Li. 1989. Molecular analysis of the genetic control of nodulation and nitrogen fixation in soybean. In A. J. Pascale (ed.), World Soybean Research Conference IV, Proceedings. pp. 1257-1262. Buenos Aires, Argentina.
Caetano-Anollés, G., L.G. Wall, A.T. DeMicheli, E.M. Macchi, W.D. Bauer, and G. Favelukes. 1988. Role of motility and chemotaxis in efficiency of nodulation by Rhizobium meliloti. Plant Physiology 86: 1228-1235.
Caetano-Anollés, G. and W.D. Bauer. 1988. Enhanced nodule initiation on alfalfa by wild-type Rhizobium meliloti co-inoculated with nod gene mutants and other bacteria. Planta 174: 385-395.
Caetano-Anollés, G. D.K. Crist-Estes, and W.D. Bauer. 1988. Chemotaxis of Rhizobium meliloti to the plant flavone luteolin requires functional nodulation genes. Journal of Bacteriology 170: 3164-3169.
Caetano-Anollés, G. and W.D. Bauer. 1988. Feedback regulation of nodule formation in alfalfa. Planta 175: 546-557.
Caetano-Anollés, G., D.K. Crist-Estes, and W.D. Bauer. 1988. Chemotaxis of Rhizobium meliloti towards the plant flavone luteolin and dependence on functional nodulation genes. In H. Bothe, F.J. de Bruijn, and W.E. Newton. (ed.), Nitrogen Fixation: Hundred Years after. p. 460. Gustav Fischer, New York.
Lagares, A., G. Caetano-Anollés, and G. Favelukes. 1987. Requirements of Ca++ or Mg++ and pH for early adsorption of Rhizobium meliloti to alfalfa roots. Anales de la XIII Reunión Latinoamericana sobre Rhizobium (October 19-25, 1986). Panamá.
Caetano-Anollés, G. and G. Favelukes. 1986. Quantitation of adsorption of rhizobia in low numbers to small legume roots. Applied and Environmental Microbiology 52: 371-376.
Caetano-Anollés, G. and G. Favelukes. 1986. Host-symbiont specificity expressed during early adsorption of Rhizobium meliloti to the root surface of alfalfa. Applied and Environmental Microbiology 52: 377-382.
Caetano-Anollés, G. and G. Favelukes. 1986. Specific attachment of Rhizobium meliloti to the root surface of alfalfa. Anais XII Reunião Latinoamericana sobre Rhizobium (October 21-26, 1984). pp. 243-249. Campinas, SP, Brasil.
Caetano-Anollés, G. 1985. The symbiotic association of Rhizobium and legumes. Doctoral thesis. National University of La Plata, Argentina. Thesis advisor: Dr. Gabriel Favelukes. Committee chairman: Nobel laureate Dr. Luis F. Leloir.
Caetano-Anollés, G., L.G. Wall, A.T. DeMicheli, E.M. Macchi, and G. Favelukes. 1985. Attachment of nonmotile and nonchemotactic mutants of Rhizobium meliloti to alfalfa roots. In H.J. Evans, P.J. Bottomley, and W.E. Newton (ed.), Nitrogen Fixation Research Progress. p. 257. Matinus Nijhoff Publishers, Boston.
Favelukes, G. and G. Caetano-Anollés. 1985. Rhizobium meliloti specifically attached to alfalfa roots, obligatory precursor towards nodulation. In H.J. Evans, P.J. Bottomley, and W.E. Newton (ed.), Nitrogen Fixation Research Progress. p. 259. Martinus Nijhoff Publishers, Boston.
Caetano-Anollés, G. and G. Favelukes. 1981. Evaluación cuantitativa de la adhesividad de rizobios a raíces. Libro de Actas de la Reunión Nacional de Fijación Biológica de Nitrógeno. pp. 291-311. La Plata.
